List of 12
 $ burst            :List of 274
  ..$ T_manual                                        : num NA
  ..$ T_MI                                            : num NA
  ..$ T_log                                           : num NA
  ..$ T_seed                                          : num 0.12
  ..$ T_bridge                                        : num 0.12
  ..$ T_edge_pre                                      : num 0.12
  ..$ T_edge_post                                     : num 0.12
  ..$ G_min                                           : int 3
  ..$ D_min                                           : num 0
  ..$ D_max                                           : num 0
  ..$ allow_bridge                                    : logi TRUE
  ..$ connector_max_n                                 : int 1
  ..$ allow_extend_left                               : logi TRUE
  ..$ allow_extend_right                              : logi TRUE
  ..$ extend_frac                                     : num 0.05
  ..$ use_context_proposals                           : logi TRUE
  ..$ use_local_compression_seed                      : logi TRUE
  ..$ use_boundary_optimization                       : logi TRUE
  ..$ label_possible_burst                            : logi FALSE
  ..$ label_boundary_possible_burst                   : logi TRUE
  ..$ refractory_suspect_sec                          : num 0.001
  ..$ refractory_suspect_action                       : chr "demote_to_possible"
  ..$ merge_candidate_fragments                       : logi TRUE
  ..$ merge_gap_max_n                                 : int 2
  ..$ contrast_ref                                    : chr "q"
  ..$ contrast_q                                      : num 0.9
  ..$ context_k                                       : int 5
  ..$ local_window                                    : int 11
  ..$ local_compression_min                           : num 1.4
  ..$ local_compression_burst_mode                    : logi TRUE
  ..$ local_compression_burst_label                   : chr "possible_burst"
  ..$ local_compression_core_pct_max                  : num 30
  ..$ local_compression_local_ratio_min               : num 2.2
  ..$ local_compression_edge_min                      : num 1.8
  ..$ local_compression_edge_geom                     : num 2.5
  ..$ local_compression_flank_ratio_min               : num 1.8
  ..$ local_compression_flank_geom_min                : num 2.5
  ..$ local_compression_candidate_class               : chr "possible_burst"
  ..$ local_compression_core_cv_max                   : num 1.1
  ..$ local_compression_max_candidates                : int 300
  ..$ local_compression_max_n_spikes                  : int 8
  ..$ local_compression_max_duration                  : num 0
  ..$ boundary_burst_mode                             : logi TRUE
  ..$ boundary_burst_label                            : chr "possible_burst"
  ..$ boundary_core_pct_max                           : num 30
  ..$ boundary_local_ratio_min                        : num 2.2
  ..$ boundary_one_flank_ratio_min                    : num 2.5
  ..$ boundary_score_possible                         : num 0.25
  ..$ boundary_max_n_spikes                           : int 8
  ..$ boundary_max_duration                           : num 0
  ..$ long_burst_enable                               : logi TRUE
  ..$ long_burst_min_spikes                           : int 13
  ..$ long_burst_max_spikes                           : int 18
  ..$ long_burst_min_duration                         : num 0
  ..$ long_burst_max_duration                         : num 0
  ..$ long_burst_edge_contrast_min                    : num 1.45
  ..$ long_burst_edge_contrast_geom                   : num 1.5
  ..$ long_burst_edge_min                             : num 3.5
  ..$ long_burst_core_pct_max                         : num 35
  ..$ long_burst_short_fraction_min                   : num 0.65
  ..$ long_burst_output_class                         : chr "long_burst"
  ..$ classic_burst_min_spikes                        : int 3
  ..$ classic_burst_max_spikes                        : int 12
  ..$ classic_burst_edge_min                          : num 3.5
  ..$ classic_burst_internal_outlier_ratio_max        : num 3.5
  ..$ classic_burst_internal_outlier_count_max        : int 1
  ..$ hf_burst_min_spikes                             : int 3
  ..$ hf_burst_max_spikes                             : int 15
  ..$ hf_burst_edge_min                               : num 3
  ..$ hf_burst_context_contrast_min                   : num 3
  ..$ hf_burst_core_q90_max                           : num 0.015
  ..$ hf_burst_core_pct_max                           : num 25
  ..$ long_burst_min_isi_count                        : int 12
  ..$ long_burst_context_contrast_min                 : num 3
  ..$ long_burst_short_isi_fraction_min               : num 0.7
  ..$ long_burst_max_duration_sec                     : num 0
  ..$ long_burst_internal_outlier_count_max           : int 3
  ..$ internal_outlier_ratio_max                      : num 3.5
  ..$ internal_outlier_count_max                      : int 1
  ..$ proposal_window_min_isi                         : int 2
  ..$ proposal_window_max_isi                         : int 8
  ..$ proposal_contrast_min                           : num 1.2
  ..$ proposal_contrast_geom_min                      : num 1.3
  ..$ contrast_min_high                               : num 1.8
  ..$ contrast_geom_high                              : num 1.8
  ..$ contrast_min_possible                           : num 1.25
  ..$ contrast_geom_possible                          : num 1.35
  ..$ contrast_min_flanks                             : int 2
  ..$ optimize_radius                                 : int 1
  ..$ score_high                                      : num 0.65
  ..$ score_possible                                  : num 0.35
  ..$ mm_penalty_start                                : num 2.5
  ..$ lv_penalty_start                                : num 1.5
  ..$ fast_context_proposals                          : logi TRUE
  ..$ max_candidates_per_train                        : int 600
  ..$ max_optimize_candidates_per_train               : int 200
  ..$ stitch_short_burst_gaps                         : logi TRUE
  ..$ stitch_gap_max_n                                : int 2
  ..$ stitch_gap_local_frac                           : num 0.85
  .. [list output truncated]
 $ tonic            :List of 25
  ..$ seed_ratio                      : num 1.2
  ..$ T_min                           : num 0.02
  ..$ T_max                           : num 0.06
  ..$ LV_core                         : num 0.5
  ..$ LV_pre                          : num 0.5
  ..$ LV_post                         : num 0.5
  ..$ local_ratio_min                 : num 0.7
  ..$ local_ratio_max                 : num 1.3
  ..$ tonic_mm_max                    : num 1.25
  ..$ tonic_mm_min                    : num 0.85
  ..$ G_min                           : int 5
  ..$ D_min                           : num 0
  ..$ connector_budget_frac           : num 0.15
  ..$ connector_max_n                 : int 1
  ..$ lv_delta                        : num 0.1
  ..$ anti_burst_veto                 : logi TRUE
  ..$ burst_overlap_guard             : logi TRUE
  ..$ burst_overlap_guard_factor      : num 1.15
  ..$ burst_overlap_lower_quantile    : num 0.1
  ..$ burst_overlap_low_fraction_max  : num 0.05
  ..$ burst_overlap_reference_quantile: num 0.95
  ..$ adaptive_use_train_ranges       : logi FALSE
  ..$ adaptive_train_ranges_hard      : logi FALSE
  ..$ adaptive_range_mode             : chr "percentile_or_absolute"
  ..$ adaptive_train_ranges           : list()
 $ highfreq         :List of 35
  ..$ enable                            : logi TRUE
  ..$ T_high_max                        : num 0.03
  ..$ pct_max                           : num 30
  ..$ min_isi_n                         : int 5
  ..$ G_min                             : int 6
  ..$ D_min                             : num 0
  ..$ connector_max_n                   : int 1
  ..$ short_fraction_min                : num 0.8
  ..$ stable_CV_max                     : num 0.3
  ..$ stable_LV_max                     : num 0.35
  ..$ stable_MM_max                     : num 1.25
  ..$ irregular_CV_min                  : num 0.35
  ..$ irregular_LV_min                  : num 0.5
  ..$ irregular_MM_min                  : num 1.5
  ..$ spiking_min_spikes                : int 30
  ..$ spiking_min_duration              : num 0
  ..$ spiking_use_abs_max               : logi TRUE
  ..$ spiking_max_ISI_abs               : num 0.02
  ..$ spiking_use_pct_max               : logi TRUE
  ..$ spiking_max_ISI_pct               : num 30
  ..$ spiking_gate_logic                : chr "either"
  ..$ spiking_short_fraction_min        : num 0.8
  ..$ tonic_min_ISI_floor_sec           : num 0.01
  ..$ tonic_low_tail_fraction_max       : num 0.05
  ..$ tonic_burst_core_veto             : logi TRUE
  ..$ tonic_burst_core_veto_min_isi_n   : int 2
  ..$ spiking_epoch_bridge_ISI_sec      : num 0.035
  ..$ spiking_q90_max_ISI_sec           : num 0.025
  ..$ spiking_tolerated_gap_ISI_sec     : num 0.075
  ..$ spiking_allowed_large_isi_fraction: num 0.25
  ..$ spiking_max_consecutive_large_isi : int 3
  ..$ spiking_short_upper_sec           : num 0.02
  ..$ ISI_abs_max                       : num 0.03
  ..$ tonic_max_ISI_sec                 : num 0.03
  ..$ tonic_bridge_upper_sec            : num 0.035
 $ pause            :List of 18
  ..$ T_strong                  : num 0.15
  ..$ T_seed                    : num 0.1
  ..$ D_min                     : num 0
  ..$ G_min                     : int 2
  ..$ alpha                     : num 2.2
  ..$ beta                      : num 0.8
  ..$ context_relax             : num 0.9
  ..$ context_tight             : num 1.1
  ..$ exclude_occupied_context  : logi TRUE
  ..$ global_median_guard       : logi TRUE
  ..$ global_median_factor      : num 2.5
  ..$ anti_tonic_veto           : logi TRUE
  ..$ adaptive_use_train_ranges : logi FALSE
  ..$ adaptive_train_ranges_hard: logi FALSE
  ..$ adaptive_range_mode       : chr "percentile_or_absolute"
  ..$ adaptive_train_ranges     : list()
  ..$ T_pause                   : num 0.1
  ..$ bridge_upper_sec          : num 0.15
 $ classification   :List of 12
  ..$ eventness_threshold                    : num 0.6
  ..$ state_eventness_threshold              : num 0.45
  ..$ eventness_edge_ref                     : num 3
  ..$ eventness_context_ref                  : num 3
  ..$ return_to_baseline_tolerance           : num 1.5
  ..$ context_window_isi_n                   : int 12
  ..$ context_gap_isi_n                      : int 2
  ..$ regularity_cv_ref                      : num 0.5
  ..$ regularity_lv_ref                      : num 0.5
  ..$ regularity_q90_q10_ref                 : num 2
  ..$ use_eventness_audit                    : logi TRUE
  ..$ apply_eventness_recommendations_to_auto: logi FALSE
 $ state            :List of 8
  ..$ classic_tonic_min_isi_count      : int 3
  ..$ classic_tonic_regularity_min     : num 0.6
  ..$ hf_tonic_min_isi_count           : int 6
  ..$ hf_tonic_regularity_min          : num 0.7
  ..$ hf_tonic_eventness_max           : num 0.5
  ..$ hf_spiking_min_isi_count         : int 29
  ..$ hf_spiking_short_isi_fraction_min: num 0.7
  ..$ hf_spiking_eventness_max         : num 0.65
 $ detector         :List of 20
  ..$ min_valid_isi_sec                            : num 9e-04
  ..$ fill_others_auto                             : logi FALSE
  ..$ patterns_to_run                              : chr [1:7] "burst" "long_burst" "tonic" "high_frequency_tonic" ...
  ..$ pattern_isi_limits                           :List of 7
  .. ..$ burst                 :List of 2
  .. .. ..$ min_sec: num 0
  .. .. ..$ max_sec: num 0
  .. ..$ long_burst            :List of 2
  .. .. ..$ min_sec: num 0
  .. .. ..$ max_sec: num 0
  .. ..$ tonic                 :List of 2
  .. .. ..$ min_sec: num 0
  .. .. ..$ max_sec: num 0
  .. ..$ high_frequency_tonic  :List of 2
  .. .. ..$ min_sec: num 0
  .. .. ..$ max_sec: num 0
  .. ..$ high_frequency_spiking:List of 2
  .. .. ..$ min_sec: num 0
  .. .. ..$ max_sec: num 0
  .. ..$ pause                 :List of 2
  .. .. ..$ min_sec: num 0
  .. .. ..$ max_sec: num 0
  .. ..$ others                :List of 2
  .. .. ..$ min_sec: num 0
  .. .. ..$ max_sec: num 0
  ..$ logisi_mcv_sec                               : num 0.1
  ..$ plot_lod_mode                                : chr "auto"
  ..$ plot_max_visible_spikes_full                 : int 50000
  ..$ plot_max_visible_spikes_interactive          : int 100000
  ..$ refractory_suspect_sec                       : num 0.001
  ..$ refractory_suspect_action                    : chr "demote_to_possible"
  ..$ evaluation_metric_mode                       : chr "strict_high_confidence"
  ..$ result_layers_enabled                        : logi TRUE
  ..$ analysis_role                                : chr "candidate_event_generator_plus_review"
  ..$ manual_negative_labels_enabled               : logi TRUE
  ..$ preset_name                                  : chr "balanced_single_unit"
  ..$ require_human_or_model_review_for_publication: logi TRUE
  ..$ artifact_min_valid_isi_sec                   : num 9e-04
  ..$ stop_on_qc_error                             : logi TRUE
  ..$ freeze_dataset_thresholds                    : logi TRUE
  ..$ honor_manual_lock_for_auto                   : logi TRUE
 $ arbitration      :List of 1
  ..$ enabled: logi TRUE
 $ spiketrainpattern:List of 10
  ..$ engine                :List of 11
  .. ..$ enabled                      : logi TRUE
  .. ..$ threshold_source_mode        : chr "auto_priority"
  .. ..$ use_manual_calibration       : logi TRUE
  .. ..$ manual_can_expand_seed_band  : logi TRUE
  .. ..$ manual_can_expand_bridge_band: logi TRUE
  .. ..$ stop_on_qc_error             : logi TRUE
  .. ..$ freeze_dataset_thresholds    : logi TRUE
  .. ..$ honor_manual_lock_for_auto   : logi TRUE
  .. ..$ core                         : chr "event_grammar"
  .. ..$ threshold_priority           : chr [1:4] "user" "manual" "histogram" "default"
  .. ..$ use_public_candidate_filter  : logi TRUE
  ..$ qc                    :List of 4
  .. ..$ artifact_min_valid_isi_sec: num 9e-04
  .. ..$ refractory_suspect_isi_sec: num 0.001
  .. ..$ refractory_suspect_action : chr "demote_to_possible"
  .. ..$ duplicate_policy          : chr "report"
  ..$ burst                 :List of 24
  .. ..$ seed_lower_sec              : num 0.001
  .. ..$ seed_upper_sec              : num 0.01
  .. ..$ bridge_upper_sec            : num 0.015
  .. ..$ boundary_floor_sec          : num 0
  .. ..$ boundary_floor_hard         : logi FALSE
  .. ..$ contrast_min                : num 2.5
  .. ..$ possible_contrast_min       : num 2
  .. ..$ min_seed_isi_count          : int 2
  .. ..$ max_bridge_isi_count        : int 4
  .. ..$ max_bridge_isi_fraction     : num 0.6
  .. ..$ max_expansion_isi_each_side : int 4
  .. ..$ max_candidates_per_train    : int 3000
  .. ..$ allow_one_sided_as_canonical: logi FALSE
  .. ..$ allow_one_sided_possible    : logi TRUE
  .. ..$ one_sided_seed_purity_min   : num 0.65
  .. ..$ strict_q95_bridge_gate      : logi FALSE
  .. ..$ q95_soft_penalty_weight     : num 0.35
  .. ..$ dynamic_possible_priority   : logi TRUE
  .. ..$ classic_max_spikes          : int 12
  .. ..$ long_min_spikes             : int 13
  .. ..$ long_max_spikes             : int 18
  .. ..$ prolonged_min_spikes        : int 19
  .. ..$ prolonged_max_spikes        : int 29
  .. ..$ classic_min_spikes          : int 3
  ..$ high_frequency_spiking:List of 8
  .. ..$ min_spikes                : int 30
  .. ..$ min_duration_sec          : num 0
  .. ..$ short_isi_upper_sec       : num 0.02
  .. ..$ q90_isi_max_sec           : num 0.025
  .. ..$ epoch_bridge_isi_sec      : num 0.035
  .. ..$ tolerated_gap_isi_sec     : num 0.075
  .. ..$ allowed_large_isi_fraction: num 0.25
  .. ..$ max_consecutive_large_isi : int 3
  ..$ high_frequency_tonic  :List of 6
  .. ..$ min_spikes           : int 6
  .. ..$ min_isi_floor_sec    : num 0.01
  .. ..$ max_isi_sec          : num 0.03
  .. ..$ bridge_upper_sec     : num 0.035
  .. ..$ low_tail_fraction_max: num 0.05
  .. ..$ veto_burst_core_run  : logi TRUE
  ..$ tonic                 :List of 11
  .. ..$ min_isi_sec                     : num 0.02
  .. ..$ max_isi_sec                     : num 0.06
  .. ..$ min_spikes                      : int 5
  .. ..$ lv_max                          : num 0.5
  .. ..$ mm_max                          : num 1.25
  .. ..$ bridge_upper_sec                : num 0.08
  .. ..$ burst_overlap_guard             : logi TRUE
  .. ..$ burst_overlap_guard_factor      : num 1.15
  .. ..$ burst_overlap_lower_quantile    : num 0.1
  .. ..$ burst_overlap_low_fraction_max  : num 0.05
  .. ..$ burst_overlap_reference_quantile: num 0.95
  ..$ pause                 :List of 3
  .. ..$ min_isi_sec     : num 0.1
  .. ..$ max_isi_sec     : num 0.15
  .. ..$ bridge_upper_sec: num 0.15
  ..$ schema_version        : chr "spiketrainpattern-1"
  ..$ neural_network        :List of 3
  .. ..$ event_guardrails : logi TRUE
  .. ..$ confidence_cutoff: num 0.7
  .. ..$ context_window   : int 3
  ..$ diagnostics           :List of 2
  .. ..$ keep_diagnostic_candidate_audit: logi TRUE
  .. ..$ export_public_tables_only      : logi TRUE
 $ metadata         :List of 7
  ..$ parameter_schema                   : chr "spiketrainpattern"
  ..$ deprecated_parameter_aliases       :'data.frame':	56 obs. of  2 variables:
  .. ..$ canonical_path: chr [1:56] "engine.enabled" "engine.threshold_source_mode" "engine.use_manual_calibration" "engine.manual_can_expand_seed_band" ...
  .. ..$ legacy_path   : chr [1:56] "event_grammar.enabled" "burst.event_grammar_threshold_source_mode" "burst.event_core_use_manual_isi_calibration" "burst.event_core_manual_can_expand_seed_band" ...
  ..$ external_input_sha256              : chr "72b1ffc33755f3517c9e45bfd5e8e7bd0deaa51c45544a32a2fb0773d166813d"
  ..$ external_input_path                : chr "/Users/zark/Desktop/Code/Simulator/Stimulation data for test/stimulation results_2/detector_inputs/latent_spike"| __truncated__
  ..$ external_package_dir               : chr "/Users/zark/Desktop/Code/SpikeTrainPatternDetector_1_1"
  ..$ simulator_oracle_thresholds_enabled: logi TRUE
  ..$ simulator_oracle_threshold_config  : chr "/Users/zark/Desktop/Code/Simulator/Stimulation data for test/stimulation results_2/metadata/simulation_config.yaml"
 $ event_core       :List of 34
  ..$ enabled                          : logi TRUE
  ..$ dataset_seed_band_enabled        : logi TRUE
  ..$ dataset_isi_burst_enabled        : logi TRUE
  ..$ use_manual_isi_calibration       : logi TRUE
  ..$ manual_can_expand_seed_band      : logi TRUE
  ..$ manual_can_expand_bridge_band    : logi TRUE
  ..$ manual_min_burst_isi_count       : int 3
  ..$ manual_can_set_hf_tonic_floor    : logi FALSE
  ..$ manual_can_expand_hf_spiking_q90 : logi TRUE
  ..$ manual_can_set_tonic_band        : logi FALSE
  ..$ seed_band_lower_sec              : num 0.001
  ..$ seed_band_upper_sec              : num 0.01
  ..$ bridge_band_upper_sec            : num 0.015
  ..$ boundary_floor_sec               : num 0
  ..$ boundary_floor_hard              : logi FALSE
  ..$ burst_contrast_min               : num 2.5
  ..$ possible_burst_contrast_min      : num 2
  ..$ min_seed_isi_count               : int 2
  ..$ max_bridge_isi_count             : int 4
  ..$ max_bridge_isi_fraction          : num 0.6
  ..$ max_expansion_isi_each_side      : int 4
  ..$ max_candidates_per_train         : int 3000
  ..$ min_spikes                       : int 3
  ..$ classic_max_spikes               : int 12
  ..$ long_min_spikes                  : int 13
  ..$ long_max_spikes                  : int 18
  ..$ prolonged_min_spikes             : int 19
  ..$ prolonged_max_spikes             : int 29
  ..$ allow_boundary_possible_burst    : logi TRUE
  ..$ context_compression_min          : num 1
  ..$ edge_return_min                  : num 0
  ..$ use_train_percentile_as_seed_gate: logi FALSE
  ..$ seed_percentile_gate_max         : num 0
  ..$ histogram_bin_width_sec          : num 0.005
 $ event_grammar    :List of 11
  ..$ enabled                           : logi TRUE
  ..$ threshold_source_mode             : chr "auto"
  ..$ histogram_bin_width_sec           : num 0.005
  ..$ user                              :List of 5
  .. ..$ burst                 :List of 5
  .. .. ..$ enable          : logi TRUE
  .. .. ..$ seed_lower_sec  : num 0.03
  .. .. ..$ seed_upper_sec  : num 0.12
  .. .. ..$ bridge_upper_sec: num 0.12
  .. .. ..$ contrast_S      : num 2.5
  .. ..$ high_frequency_spiking:List of 5
  .. .. ..$ enable          : logi TRUE
  .. .. ..$ seed_lower_sec  : num 0.003
  .. .. ..$ seed_upper_sec  : num 0.012
  .. .. ..$ bridge_upper_sec: num 0.02
  .. .. ..$ contrast_S      : num NA
  .. ..$ high_frequency_tonic  :List of 5
  .. .. ..$ enable          : logi TRUE
  .. .. ..$ seed_lower_sec  : num 0.024
  .. .. ..$ seed_upper_sec  : num 0.04
  .. .. ..$ bridge_upper_sec: num 0.04
  .. .. ..$ contrast_S      : num NA
  .. ..$ tonic                 :List of 5
  .. .. ..$ enable          : logi TRUE
  .. .. ..$ seed_lower_sec  : num 0.25
  .. .. ..$ seed_upper_sec  : num 0.5
  .. .. ..$ bridge_upper_sec: num 0.5
  .. .. ..$ contrast_S      : num NA
  .. ..$ pause                 :List of 5
  .. .. ..$ enable          : logi TRUE
  .. .. ..$ seed_lower_sec  : num 0.6
  .. .. ..$ seed_upper_sec  : num 1.5
  .. .. ..$ bridge_upper_sec: num 1.5
  .. .. ..$ contrast_S      : num NA
  ..$ allow_one_sided_burst_as_canonical: logi FALSE
  ..$ allow_one_sided_possible          : logi TRUE
  ..$ one_sided_seed_purity_min         : num 0.65
  ..$ strict_q95_bridge_gate            : logi FALSE
  ..$ q95_soft_penalty_weight           : num 0.35
  ..$ dynamic_possible_priority         : logi TRUE
  ..$ q95_soft_severe_ratio             : num 1.35
